/EXTERNAL BLUEPRINT/K006419_14_lane_gembs

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SAMPLE K006419_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1221382084 100.00 % 610691042 100.00 % 610691042 100.00 %
General Reads 1193362894 97.71 % 599186316 98.12 % 594176578 97.30 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3121906 0.26 % 1566001 0.26 % 1555905 0.25 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24897284 2.04 % 9938725 1.63 % 14958559 2.45 %
Bisulfite_reads C2T 613194257 50.20 % 307859192 50.41 % 305335065 50.00 %
Bisulfite_reads G2A 583290543 47.76 % 292893125 47.96 % 290397418 47.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 507820179
Average Unique 83.16 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48223500170 38.71 % 18505273439 29.71 % 29718226731 47.71 %
Base Counts Overall C 13517938674 10.85 % 568245003 0.91 % 12949693671 20.79 %
Base Counts Overall G 13524221066 10.86 % 12978935152 20.84 % 545285914 0.88 %
Base Counts Overall T 48015824987 38.54 % 29623964049 47.56 % 18391860938 29.53 %
Base Counts Overall N 1299487671 1.04 % 614068641 0.99 % 685419030 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991465841502144
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 582448320



Mapping Quality

Mapping Quality Histogram
K006419_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006419_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
1532CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364654_14