/EXTERNAL BLUEPRINT/methylation/K006419_14_lane_gembs

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SAMPLE K006419_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26856098 23611959 87.92 %
NonRefCpG 260181 193395 74.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006419_14_lane_gembs_coverage_refCpG.png ./IMG//K006419_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006419_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006419_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006419_14_lane_gembs_quality_refcpg.png ./IMG//K006419_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006419_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10841816 20.47 % 9473455 19.45 % 92166 18.52 % 65829 16.16 %
Intermediate (0.3-0.7) 10470448 19.77 % 9178572 18.84 % 111935 22.49 % 83211 20.43 %
Methylated (0.7-1) 31662094 59.77 % 30061520 61.71 % 293612 58.99 % 258210 63.40 %
Median Methylation 0.800 0.810 0.780 0.820