/EXTERNAL BLUEPRINT/K006339_11_lane_gembs/BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290186_11

BACK

SAMPLE K006339_11_lane_gembs LANE BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290186_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1050116242 100.00 % 525058121 100.00 % 525058121 100.00 %
General Reads 1002654100 95.48 % 503014153 95.80 % 499639947 95.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19653783 1.87 % 9850842 1.88 % 9802941 1.87 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27808359 2.65 % 12193126 2.32 % 15615233 2.97 %
Bisulfite_reads C2T 537013171 51.14 % 269424275 51.31 % 267588896 50.96 %
Bisulfite_reads G2A 485294712 46.21 % 243440720 46.36 % 241853992 46.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 414535533
Average Unique 78.95 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38494703424 35.94 % 15093324147 28.18 % 23401379277 43.70 %
Base Counts Overall C 14493241748 13.53 % 774300704 1.45 % 13718941044 25.62 %
Base Counts Overall G 14713571574 13.74 % 13958964648 26.06 % 754606926 1.41 %
Base Counts Overall T 38323159324 35.78 % 23195274982 43.31 % 15127884342 28.25 %
Base Counts Overall N 1087180614 1.01 % 534063861 1.00 % 553116753 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991807680745475
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 495085933



Mapping Quality

Mapping Quality Histogram
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290186_11.mapq.png



Read Length

Read Length Reads
101 525058121
101 525058121



Insert Size Plot

Insert Size Histogram
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290186_11.isize.png