/EXTERNAL BLUEPRINT/mapping_coverage/K006339_11_lane_gembs
BACK
SAMPLE K006339_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
992479195 |
100% |
87563751176 |
100% |
| Mapped |
982401998 |
98.98 % |
86545954279 |
98.84 % |
| Passed |
797563732 |
80.36 % |
67877289413 |
77.52 % |
| NotPassed |
184838266 |
18.62 % |
18668664866 |
21.32 % |
| |
|
|
|
|
| LowMAPQ |
161424278 |
16.26 % |
16303852078 |
18.62 % |
| MateUnmapped |
10077197 |
1.02 % |
1017796897 |
1.16 % |
| Duplicate |
10192751 |
1.03 % |
1029467851 |
1.18 % |
| BadOrientation |
36 |
0.00 % |
3636 |
0.00 % |
| LargeInsertSize |
11692 |
0.00 % |
1180892 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13209509 |
1.33 % |
1334160409 |
1.52 % |
| Unmapped |
10077197 |
1.02 % |
1017796897 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
80549129534 |
100% |
| Passed |
63783965097 |
79.19 % |
| Trimmed |
3378868151 |
4.19 % |
| Clipped |
93305389 |
0.12 % |
| Overlapping |
12578534732 |
15.62 % |
| LowQuality |
714456165 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |