/EXTERNAL BLUEPRINT/methylation/K006339_11_lane_gembs

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SAMPLE K006339_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26704293 20404948 76.41 %
NonRefCpG 332114 156011 46.98 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006339_11_lane_gembs_coverage_refCpG.png ./IMG//K006339_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006339_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006339_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006339_11_lane_gembs_quality_refcpg.png ./IMG//K006339_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006339_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6419265 13.42 % 4675515 11.68 % 108020 19.05 % 31259 9.07 %
Intermediate (0.3-0.7) 7464927 15.61 % 5043709 12.60 % 125860 22.20 % 56695 16.44 %
Methylated (0.7-1) 33937909 70.97 % 30308902 75.72 % 333142 58.75 % 256850 74.49 %
Median Methylation 0.850 0.870 0.780 0.860