{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 34045216, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25403330, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 74.62, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 82287945, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 80078197, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.31, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 21546509, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3334684, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.154767
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 64061575, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3271286, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.051065
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 21541326, 
            "distinct_read_pairs": 18347749, 
            "one_read_pair": 15751810, 
            "two_read_pair": 2136727, 
            "NRF": 0.851746, 
            "PBC1": 0.858515, 
            "PBC2": 7.371934
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 63970344, 
            "distinct_read_pairs": 60866155, 
            "one_read_pair": 58002997, 
            "two_read_pair": 2729232, 
            "NRF": 0.951475, 
            "PBC1": 0.95296, 
            "PBC2": 21.252498
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 18211825, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 18211825, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 60790289, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 60790289, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 24538, 
        "Np": 0, 
        "N_opt": 24538, 
        "N_consv": 24538, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 180, 
            "corr_est_frag_len": 0.297812580147438, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.2803716, 
            "argmin_corr": 1500, 
            "min_corr": 0.1630995, 
            "NSC": 1.825956, 
            "RSC": 1.148722
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.393875369194
        }, 
        "rep1-pr1": {
            "FRiP": 0.392686875526
        }, 
        "rep1-pr2": {
            "FRiP": 0.392634590592
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.384128457932
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.157609284634, 
            "auc": 0.487272892428, 
            "ch_div": 0.251621429257, 
            "elbow_pt": 4.88340236874e-52, 
            "jsd": 0.724936822239, 
            "syn_auc": 0.489137479656, 
            "syn_elbow_pt": 0.410771279889, 
            "syn_jsd": 0.467691448721
        }
    ]
}
