/EXTERNAL BLUEPRINT/K006381_K006410_26_lane_gembs/S00UJK.Bisulfite-Seq.DNA_Methylation.EGAX00001343015_15

BACK

SAMPLE K006381_K006410_26_lane_gembs LANE S00UJK.Bisulfite-Seq.DNA_Methylation.EGAX00001343015_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1176157018 100.00 % 588078509 100.00 % 588078509 100.00 %
General Reads 1121080456 95.32 % 561906529 95.55 % 559173927 95.08 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20350117 1.73 % 10192880 1.73 % 10157237 1.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 34726445 2.95 % 15979100 2.72 % 18747345 3.19 %
Bisulfite_reads C2T 601767391 51.16 % 301727576 51.31 % 300039815 51.02 %
Bisulfite_reads G2A 539663182 45.88 % 270371833 45.98 % 269291349 45.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 426838720
Average Unique 72.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41324495275 34.45 % 17045476098 28.42 % 24279019177 40.48 %
Base Counts Overall C 18157948578 15.14 % 1005446109 1.68 % 17152502469 28.60 %
Base Counts Overall G 18323586113 15.27 % 17321717805 28.88 % 1001868308 1.67 %
Base Counts Overall T 40941052188 34.13 % 24019789677 40.04 % 16921262511 28.21 %
Base Counts Overall N 1220933682 1.02 % 591578229 0.99 % 629355453 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987770453181491
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 538307083



Mapping Quality

Mapping Quality Histogram
S00UJK.Bisulfite-Seq.DNA_Methylation.EGAX00001343015_15.mapq.png



Read Length

Read Length Reads
101 588078509
101 588078509



Insert Size Plot

Insert Size Histogram
S00UJK.Bisulfite-Seq.DNA_Methylation.EGAX00001343015_15.isize.png