/EXTERNAL BLUEPRINT/mapping_coverage/K006381_K006410_26_lane_gembs
BACK
SAMPLE K006381_K006410_26_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1907531326 |
100% |
167660912707 |
100% |
| Mapped |
1889495723 |
99.05 % |
165839316804 |
98.91 % |
| Passed |
1492617854 |
78.25 % |
125754652035 |
75.01 % |
| NotPassed |
396877869 |
20.81 % |
40084664769 |
23.91 % |
| |
|
|
|
|
| LowMAPQ |
343690820 |
18.02 % |
34712772820 |
20.70 % |
| MateUnmapped |
18035603 |
0.95 % |
1821595903 |
1.09 % |
| Duplicate |
17505605 |
0.92 % |
1768066105 |
1.05 % |
| BadOrientation |
180 |
0.00 % |
18180 |
0.00 % |
| LargeInsertSize |
57464 |
0.00 % |
5803864 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35623800 |
1.87 % |
3598003800 |
2.15 % |
| Unmapped |
18035603 |
0.95 % |
1821595903 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
150744456875 |
100% |
| Passed |
118122907366 |
78.36 % |
| Trimmed |
6365088964 |
4.22 % |
| Clipped |
164146236 |
0.11 % |
| Overlapping |
24825658604 |
16.47 % |
| LowQuality |
1266655705 |
0.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |