/EXTERNAL BLUEPRINT/K006344_12_lane_gembs

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SAMPLE K006344_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1253252500 100.00 % 626626250 100.00 % 626626250 100.00 %
General Reads 1196316031 95.46 % 600375487 95.81 % 595940544 95.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23686712 1.89 % 11875650 1.90 % 11811062 1.88 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 33249757 2.65 % 14375113 2.29 % 18874644 3.01 %
Bisulfite_reads C2T 640282066 51.09 % 321327274 51.28 % 318954792 50.90 %
Bisulfite_reads G2A 579720677 46.26 % 290923863 46.43 % 288796814 46.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 495908072
Average Unique 79.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46393911381 36.29 % 17960222910 28.10 % 28433688471 44.49 %
Base Counts Overall C 16825678763 13.16 % 914298208 1.43 % 15911380555 24.89 %
Base Counts Overall G 17158739154 13.42 % 16279855996 25.47 % 878883158 1.38 %
Base Counts Overall T 46189979105 36.13 % 28129711620 44.01 % 18060267485 28.26 %
Base Counts Overall N 1263446597 0.99 % 631788766 0.99 % 631657831 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992499073918379
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 591402635



Mapping Quality

Mapping Quality Histogram
K006344_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006344_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
PB270313.Bisulfite-Seq.DNA_Methylation.EGAX00001290191_12