/EXTERNAL BLUEPRINT/mapping_coverage/K006344_12_lane_gembs
BACK
SAMPLE K006344_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1182551253 |
100% |
104775881153 |
100% |
| Mapped |
1170449365 |
98.98 % |
103553590465 |
98.83 % |
| Passed |
950827409 |
80.40 % |
81371772909 |
77.66 % |
| NotPassed |
219621956 |
18.57 % |
22181817556 |
21.17 % |
| |
|
|
|
|
| LowMAPQ |
189775854 |
16.05 % |
19167361254 |
18.29 % |
| MateUnmapped |
12101888 |
1.02 % |
1222290688 |
1.17 % |
| Duplicate |
13786063 |
1.17 % |
1392392363 |
1.33 % |
| BadOrientation |
38 |
0.00 % |
3838 |
0.00 % |
| LargeInsertSize |
12872 |
0.00 % |
1300072 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16047129 |
1.36 % |
1620760029 |
1.55 % |
| Unmapped |
12101888 |
1.02 % |
1222290688 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
96028166122 |
100% |
| Passed |
76427861453 |
79.59 % |
| Trimmed |
4071920928 |
4.24 % |
| Clipped |
112623782 |
0.12 % |
| Overlapping |
14543769431 |
15.15 % |
| LowQuality |
871990528 |
0.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |