/EXTERNAL BLUEPRINT/methylation/K006344_12_lane_gembs

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SAMPLE K006344_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26821610 21750607 81.09 %
NonRefCpG 329608 168878 51.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006344_12_lane_gembs_coverage_refCpG.png ./IMG//K006344_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006344_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006344_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006344_12_lane_gembs_quality_refcpg.png ./IMG//K006344_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006344_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6429111 13.02 % 5006885 11.62 % 112056 19.28 % 35014 9.25 %
Intermediate (0.3-0.7) 7105408 14.39 % 5171721 12.01 % 121375 20.89 % 61072 16.14 %
Methylated (0.7-1) 35840279 72.59 % 32895468 76.37 % 347670 59.83 % 282368 74.61 %
Median Methylation 0.860 0.870 0.790 0.860