/EXTERNAL BLUEPRINT/methylation/K006346_9_lane_gembs

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SAMPLE K006346_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26830054 21920104 81.70 %
NonRefCpG 336058 170503 50.74 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006346_9_lane_gembs_coverage_refCpG.png ./IMG//K006346_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006346_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006346_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006346_9_lane_gembs_quality_refcpg.png ./IMG//K006346_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006346_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6502868 12.90 % 5085912 11.49 % 127251 20.91 % 39486 9.92 %
Intermediate (0.3-0.7) 7471332 14.82 % 5578998 12.61 % 125805 20.68 % 66321 16.66 %
Methylated (0.7-1) 36442950 72.28 % 33583049 75.90 % 355372 58.41 % 292356 73.43 %
Median Methylation 0.850 0.870 0.780 0.860