/EXTERNAL BLUEPRINT/K010541_1_lane_gembs

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SAMPLE K010541_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1154848054 100.00 % 577424027 100.00 % 577424027 100.00 %
General Reads 1102761730 95.49 % 553347775 95.83 % 549413955 95.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22050848 1.91 % 11055569 1.91 % 10995279 1.90 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30035476 2.60 % 13020683 2.25 % 17014793 2.95 %
Bisulfite_reads C2T 591617278 51.23 % 296905787 51.42 % 294711491 51.04 %
Bisulfite_reads G2A 533195300 46.17 % 267497557 46.33 % 265697743 46.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 423212811
Average Unique 73.29 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41483387326 35.22 % 16327205571 27.72 % 25156181755 42.71 %
Base Counts Overall C 16815251641 14.28 % 899524639 1.53 % 15915727002 27.02 %
Base Counts Overall G 17029528410 14.46 % 16147300481 27.42 % 882227929 1.50 %
Base Counts Overall T 41273881755 35.04 % 24943533152 42.35 % 16330348603 27.73 %
Base Counts Overall N 1192452376 1.01 % 579686911 0.98 % 612765465 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993607928116645
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 527408925



Mapping Quality

Mapping Quality Histogram
K010541_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010541_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010541_1798783_2