/EXTERNAL BLUEPRINT/K006350_12_lane_gembs

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SAMPLE K006350_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 986850458 100.00 % 493425229 100.00 % 493425229 100.00 %
General Reads 949415050 96.21 % 476138686 96.50 % 473276364 95.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16871213 1.71 % 8451120 1.71 % 8420093 1.71 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20564195 2.08 % 8835423 1.79 % 11728772 2.38 %
Bisulfite_reads C2T 504066428 51.08 % 252795420 51.23 % 251271008 50.92 %
Bisulfite_reads G2A 462219835 46.84 % 231794386 46.98 % 230425449 46.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 393890942
Average Unique 79.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36171957742 35.94 % 14139392166 28.09 % 22032565576 43.78 %
Base Counts Overall C 13645636606 13.56 % 732378995 1.46 % 12913257611 25.66 %
Base Counts Overall G 13849567154 13.76 % 13141799693 26.11 % 707767461 1.41 %
Base Counts Overall T 35970607696 35.74 % 21815251194 43.34 % 14155356502 28.13 %
Base Counts Overall N 1020977518 1.01 % 500551310 0.99 % 520426208 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994790842661432
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 468367243



Mapping Quality

Mapping Quality Histogram
K006350_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006350_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00003.Bisulfite-Seq.DNA_Methylation.EGAX00001290289_12