/EXTERNAL BLUEPRINT/methylation/K006350_12_lane_gembs

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SAMPLE K006350_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26555050 20498385 77.19 %
NonRefCpG 342233 154241 45.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006350_12_lane_gembs_coverage_refCpG.png ./IMG//K006350_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006350_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006350_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006350_12_lane_gembs_quality_refcpg.png ./IMG//K006350_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006350_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5303680 11.24 % 3765763 9.51 % 116585 20.14 % 30579 8.97 %
Intermediate (0.3-0.7) 6800080 14.41 % 4511374 11.39 % 123128 21.27 % 51292 15.05 %
Methylated (0.7-1) 35077515 74.35 % 31320009 79.10 % 339184 58.59 % 259052 75.99 %
Median Methylation 0.880 0.890 0.790 0.880