/EXTERNAL BLUEPRINT/K006396_K006409_19_lane_gembs/UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345067_11

BACK

SAMPLE K006396_K006409_19_lane_gembs LANE UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345067_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1212957180 100.00 % 606478590 100.00 % 606478590 100.00 %
General Reads 1154475433 95.18 % 579101466 95.49 % 575373967 94.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 29334138 2.42 % 14702294 2.42 % 14631844 2.41 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29147609 2.40 % 12674830 2.09 % 16472779 2.72 %
Bisulfite_reads C2T 623019875 51.36 % 312542342 51.53 % 310477533 51.19 %
Bisulfite_reads G2A 560789696 46.23 % 281261418 46.38 % 279528278 46.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 470094175
Average Unique 77.51 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43734033632 35.35 % 17458284193 28.22 % 26275749439 42.48 %
Base Counts Overall C 17535059155 14.17 % 989069024 1.60 % 16545990131 26.75 %
Base Counts Overall G 17744768041 14.34 % 16778780913 27.12 % 965987128 1.56 %
Base Counts Overall T 43443047712 35.11 % 26019519252 42.06 % 17423528460 28.17 %
Base Counts Overall N 1264723820 1.02 % 615162798 0.99 % 649561022 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99923139236217
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 571493528



Mapping Quality

Mapping Quality Histogram
UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345067_11.mapq.png



Read Length

Read Length Reads
101 606478590
101 606478590



Insert Size Plot

Insert Size Histogram
UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345067_11.isize.png