/EXTERNAL BLUEPRINT/K006396_K006409_19_lane_gembs/UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345081_8

BACK

SAMPLE K006396_K006409_19_lane_gembs LANE UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345081_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 809246684 100.00 % 404623342 100.00 % 404623342 100.00 %
General Reads 790303524 97.66 % 396784039 98.06 % 393519485 97.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4296280 0.53 % 2154976 0.53 % 2141304 0.53 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14646880 1.81 % 5684327 1.40 % 8962553 2.22 %
Bisulfite_reads C2T 406462505 50.23 % 204050609 50.43 % 202411896 50.02 %
Bisulfite_reads G2A 388137299 47.96 % 194888406 48.17 % 193248893 47.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 335361825
Average Unique 82.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31972121572 38.73 % 12237052725 29.65 % 19735068847 47.82 %
Base Counts Overall C 8959394428 10.85 % 416903529 1.01 % 8542490899 20.70 %
Base Counts Overall G 9027215090 10.94 % 8632106962 20.92 % 395108128 0.96 %
Base Counts Overall T 31745236312 38.46 % 19565208502 47.41 % 12180027810 29.51 %
Base Counts Overall N 839194366 1.02 % 420309166 1.02 % 418885200 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998967788400624
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 384506858



Mapping Quality

Mapping Quality Histogram
UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345081_8.mapq.png



Read Length

Read Length Reads
101 404623342
101 404623342



Insert Size Plot

Insert Size Histogram
UMCG00021.Bisulfite-Seq.DNA_Methylation.EGAX00001345081_8.isize.png