/EXTERNAL BLUEPRINT/mapping_coverage/K006396_K006409_19_lane_gembs
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SAMPLE K006396_K006409_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1925835431 |
100% |
174857507266 |
100% |
| Mapped |
1906794162 |
99.01 % |
172934339097 |
98.90 % |
| Passed |
1554316434 |
80.71 % |
137334088569 |
78.54 % |
| NotPassed |
352477728 |
18.30 % |
35600250528 |
20.36 % |
| |
|
|
|
|
| LowMAPQ |
299170840 |
15.53 % |
30216254840 |
17.28 % |
| MateUnmapped |
19041269 |
0.99 % |
1923168169 |
1.10 % |
| Duplicate |
18971272 |
0.99 % |
1916098472 |
1.10 % |
| BadOrientation |
56 |
0.00 % |
5656 |
0.00 % |
| LargeInsertSize |
29242 |
0.00 % |
2953442 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
34306318 |
1.78 % |
3464938118 |
1.98 % |
| Unmapped |
19041269 |
0.99 % |
1923168169 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
156976406446 |
100% |
| Passed |
129090997351 |
82.24 % |
| Trimmed |
6769483610 |
4.31 % |
| Clipped |
169565275 |
0.11 % |
| Overlapping |
19472752602 |
12.40 % |
| LowQuality |
1473607608 |
0.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |