/EXTERNAL BLUEPRINT/methylation/K006396_K006409_19_lane_gembs
BACK
SAMPLE K006396_K006409_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26907618 |
24771140 |
92.06 % |
| NonRefCpG |
266647 |
202159 |
75.82 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6906504 |
13.00 % |
6284035 |
12.49 % |
48330 |
9.52 % |
27521 |
6.54 % |
| Intermediate (0.3-0.7) |
5236582 |
9.86 % |
4554208 |
9.05 % |
64855 |
12.78 % |
41638 |
9.89 % |
| Methylated (0.7-1) |
40974489 |
77.14 % |
39470956 |
78.46 % |
394472 |
77.70 % |
351886 |
83.57 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.910 |
|
0.910 |
|
0.900 |
|
0.910 |
|