/EXTERNAL BLUEPRINT/K006333_15_lane_gembs

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SAMPLE K006333_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1394546788 100.00 % 697273394 100.00 % 697273394 100.00 %
General Reads 1352526761 96.99 % 678503190 97.31 % 674023571 96.67 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19918057 1.43 % 9981916 1.43 % 9936141 1.42 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22101970 1.58 % 8788288 1.26 % 13313682 1.91 %
Bisulfite_reads C2T 723354085 51.87 % 362872774 52.04 % 360481311 51.70 %
Bisulfite_reads G2A 649090733 46.54 % 325612332 46.70 % 323478401 46.39 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 547581874
Average Unique 78.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 51486365901 36.20 % 20142681231 28.32 % 31343684670 44.07 %
Base Counts Overall C 18906881106 13.29 % 894473194 1.26 % 18012407912 25.33 %
Base Counts Overall G 19239689208 13.53 % 18369420337 25.83 % 870268871 1.22 %
Base Counts Overall T 51170584699 35.97 % 31015100705 43.61 % 20155483994 28.34 %
Base Counts Overall N 1440251462 1.01 % 700210721 0.98 % 740040741 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994022740995089
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 662470620



Mapping Quality

Mapping Quality Histogram
K006333_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006333_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00H6O.Bisulfite-Seq.DNA_Methylation.EGAX00001236270_15