/EXTERNAL BLUEPRINT/methylation/K006351_9_lane_gembs

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SAMPLE K006351_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26507845 19617730 74.01 %
NonRefCpG 322218 143686 44.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006351_9_lane_gembs_coverage_refCpG.png ./IMG//K006351_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006351_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006351_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006351_9_lane_gembs_quality_refcpg.png ./IMG//K006351_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006351_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6499377 13.98 % 4301518 11.30 % 107490 19.97 % 29954 9.52 %
Intermediate (0.3-0.7) 7148886 15.37 % 4461908 11.72 % 119713 22.24 % 48431 15.40 %
Methylated (0.7-1) 32849181 70.65 % 29306998 76.98 % 310990 57.78 % 236101 75.08 %
Median Methylation 0.870 0.900 0.780 0.890