{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 49609932, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 48265433, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.29, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 41854479, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41361026, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.82, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 43235369, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 14396111, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.332971
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 33082298, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 577841, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.017467
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 43233219, 
            "distinct_read_pairs": 29493487, 
            "one_read_pair": 20813092, 
            "two_read_pair": 5512522, 
            "NRF": 0.682195, 
            "PBC1": 0.705684, 
            "PBC2": 3.775603
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 33023328, 
            "distinct_read_pairs": 32499942, 
            "one_read_pair": 32011807, 
            "two_read_pair": 479057, 
            "NRF": 0.984151, 
            "PBC1": 0.98498, 
            "PBC2": 66.822543
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 28839258, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 28839258, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 32504457, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32504457, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 43669, 
        "Np": 0, 
        "N_opt": 43669, 
        "N_consv": 43669, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 225, 
            "corr_est_frag_len": 0.577270584284895, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.5029222, 
            "argmin_corr": 1500, 
            "min_corr": 0.1760179, 
            "NSC": 3.279613, 
            "RSC": 1.227432
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.799614141965
        }, 
        "rep1-pr1": {
            "FRiP": 0.794925505114
        }, 
        "rep1-pr2": {
            "FRiP": 0.794972235504
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.792904209716
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0395415457915, 
            "auc": 0.489860434846, 
            "ch_div": 0.476658122973, 
            "elbow_pt": 1.48487054449e-82, 
            "jsd": 0.949051729998, 
            "syn_auc": 0.499389904322, 
            "syn_elbow_pt": 0.671412227262, 
            "syn_jsd": 0.72531914199
        }
    ]
}
