/EXTERNAL BLUEPRINT/K006334_6_lane_gembs/T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001273466

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SAMPLE K006334_6_lane_gembs LANE T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001273466

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1966496380 100.00 % 983248190 100.00 % 983248190 100.00 %
General Reads 1855831535 94.37 % 931294087 94.72 % 924537448 94.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 40759302 2.07 % 20428875 2.08 % 20330427 2.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 69905543 3.55 % 31525228 3.21 % 38380315 3.90 %
Bisulfite_reads C2T 990181443 50.35 % 496888370 50.54 % 493293073 50.17 %
Bisulfite_reads G2A 906409394 46.09 % 454834592 46.26 % 451574802 45.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 768436765
Average Unique 78.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72218255449 36.00 % 28237036260 28.16 % 43981219189 43.85 %
Base Counts Overall C 27197168277 13.56 % 1682939284 1.68 % 25514228993 25.44 %
Base Counts Overall G 27387221724 13.65 % 25810378088 25.74 % 1576843636 1.57 %
Base Counts Overall T 71738266606 35.76 % 43561596127 43.44 % 28176670479 28.09 %
Base Counts Overall N 2041718704 1.02 % 999365621 1.00 % 1042353083 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990132729504483
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 917104542



Mapping Quality

Mapping Quality Histogram
T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001273466.mapq.png



Read Length

Read Length Reads
101 983248190
101 983248190



Insert Size Plot

Insert Size Histogram
T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001273466.isize.png