/EXTERNAL BLUEPRINT/mapping_coverage/K006334_6_lane_gembs
BACK
SAMPLE K006334_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1817922170 |
100% |
158044112647 |
100% |
| Mapped |
1798396220 |
98.93 % |
156071991697 |
98.75 % |
| Passed |
1437350313 |
79.07 % |
119606355090 |
75.68 % |
| NotPassed |
361045907 |
19.86 % |
36465636607 |
23.07 % |
| |
|
|
|
|
| LowMAPQ |
298903622 |
16.44 % |
30189265822 |
19.10 % |
| MateUnmapped |
19525950 |
1.07 % |
1972120950 |
1.25 % |
| Duplicate |
37988786 |
2.09 % |
3836867386 |
2.43 % |
| BadOrientation |
62 |
0.00 % |
6262 |
0.00 % |
| LargeInsertSize |
23764 |
0.00 % |
2400164 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24129673 |
1.33 % |
2437096973 |
1.54 % |
| Unmapped |
19525950 |
1.07 % |
1972120950 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
145166287980 |
100% |
| Passed |
112203425849 |
77.29 % |
| Trimmed |
6063724577 |
4.18 % |
| Clipped |
167869667 |
0.12 % |
| Overlapping |
25392063223 |
17.49 % |
| LowQuality |
1339204664 |
0.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |