/EXTERNAL BLUEPRINT/methylation/K006334_6_lane_gembs

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SAMPLE K006334_6_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26763348 21916145 81.89 %
NonRefCpG 314824 169199 53.74 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006334_6_lane_gembs_coverage_refCpG.png ./IMG//K006334_6_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006334_6_lane_gembs_coverage_nonRefCpG.png ./IMG//K006334_6_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006334_6_lane_gembs_quality_refcpg.png ./IMG//K006334_6_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006334_6_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6594868 13.41 % 5318541 12.27 % 95002 17.29 % 33110 8.96 %
Intermediate (0.3-0.7) 8491165 17.27 % 6374833 14.71 % 126639 23.05 % 67889 18.36 %
Methylated (0.7-1) 34090658 69.32 % 31646822 73.02 % 327820 59.66 % 268676 72.68 %
Median Methylation 0.840 0.860 0.790 0.850