/EXTERNAL BLUEPRINT/K006337_6_lane_gembs/NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273469

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SAMPLE K006337_6_lane_gembs LANE NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273469

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2018335706 100.00 % 1009167853 100.00 % 1009167853 100.00 %
General Reads 1902649369 94.27 % 956195731 94.75 % 946453638 93.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 25745118 1.28 % 12931322 1.28 % 12813796 1.27 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 89941219 4.46 % 40040800 3.97 % 49900419 4.94 %
Bisulfite_reads C2T 1003026592 49.70 % 504048755 49.95 % 498977837 49.44 %
Bisulfite_reads G2A 925367895 45.85 % 465078298 46.09 % 460289597 45.61 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 784173153
Average Unique 77.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75076434817 36.47 % 28888912479 28.07 % 46187522338 44.87 %
Base Counts Overall C 27026978672 13.13 % 1776265857 1.73 % 25250712815 24.53 %
Base Counts Overall G 27354811557 13.29 % 25690972947 24.96 % 1663838610 1.62 %
Base Counts Overall T 74346218360 36.11 % 45551007241 44.25 % 28795211119 27.97 %
Base Counts Overall N 2065798606 1.00 % 1027962482 1.00 % 1037836124 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989946156255031
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 929070635



Mapping Quality

Mapping Quality Histogram
NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273469.mapq.png



Read Length

Read Length Reads
101 1009167853
101 1009167853



Insert Size Plot

Insert Size Histogram
NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273469.isize.png