/EXTERNAL BLUEPRINT/mapping_coverage/K006337_6_lane_gembs
BACK
SAMPLE K006337_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1864257298 |
100% |
163230727308 |
100% |
| Mapped |
1842155758 |
98.81 % |
160998471768 |
98.63 % |
| Passed |
1482229757 |
79.51 % |
124645945667 |
76.36 % |
| NotPassed |
359926001 |
19.31 % |
36352526101 |
22.27 % |
| |
|
|
|
|
| LowMAPQ |
292984772 |
15.72 % |
29591461972 |
18.13 % |
| MateUnmapped |
22101540 |
1.19 % |
2232255540 |
1.37 % |
| Duplicate |
38480394 |
2.06 % |
3886519794 |
2.38 % |
| BadOrientation |
60 |
0.00 % |
6060 |
0.00 % |
| LargeInsertSize |
20002 |
0.00 % |
2020202 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28440773 |
1.53 % |
2872518073 |
1.76 % |
| Unmapped |
22101540 |
1.19 % |
2232255540 |
1.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
149698215146 |
100% |
| Passed |
117075677983 |
78.21 % |
| Trimmed |
6302147174 |
4.21 % |
| Clipped |
176775190 |
0.12 % |
| Overlapping |
24875494289 |
16.62 % |
| LowQuality |
1268120510 |
0.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |