/EXTERNAL BLUEPRINT/methylation/K006337_6_lane_gembs

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SAMPLE K006337_6_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26850247 21766332 81.07 %
NonRefCpG 300127 162677 54.20 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006337_6_lane_gembs_coverage_refCpG.png ./IMG//K006337_6_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006337_6_lane_gembs_coverage_nonRefCpG.png ./IMG//K006337_6_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006337_6_lane_gembs_quality_refcpg.png ./IMG//K006337_6_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006337_6_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8882233 17.52 % 7118021 15.92 % 120719 22.16 % 52448 13.93 %
Intermediate (0.3-0.7) 11825589 23.33 % 9431402 21.09 % 148199 27.20 % 93001 24.70 %
Methylated (0.7-1) 29981537 59.15 % 28171458 62.99 % 275966 50.65 % 231046 61.37 %
Median Methylation 0.780 0.800 0.700 0.790