/EXTERNAL BLUEPRINT/K006341_12_lane_gembs

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SAMPLE K006341_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1080869924 100.00 % 540434962 100.00 % 540434962 100.00 %
General Reads 1024190624 94.76 % 514039491 95.12 % 510151133 94.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23623119 2.19 % 11846117 2.19 % 11777002 2.18 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 33056181 3.06 % 14549354 2.69 % 18506827 3.42 %
Bisulfite_reads C2T 548371249 50.73 % 275213458 50.92 % 273157791 50.54 %
Bisulfite_reads G2A 499442494 46.21 % 250672150 46.38 % 248770344 46.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 426002822
Average Unique 78.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39686315202 36.00 % 15380510289 27.90 % 24305804913 44.09 %
Base Counts Overall C 14841442707 13.46 % 875886685 1.59 % 13965556022 25.33 %
Base Counts Overall G 15113660388 13.71 % 14262868394 25.87 % 850791994 1.54 %
Base Counts Overall T 39518133070 35.84 % 24059927526 43.65 % 15458205544 28.04 %
Base Counts Overall N 1089180881 0.99 % 545173230 0.99 % 544007651 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991155839521265
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 507917332



Mapping Quality

Mapping Quality Histogram
K006341_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006341_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290188_12