/EXTERNAL BLUEPRINT/mapping_coverage/K006341_12_lane_gembs
BACK
SAMPLE K006341_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1014402390 |
100% |
89211421534 |
100% |
| Mapped |
1004046871 |
98.98 % |
88165514115 |
98.83 % |
| Passed |
817913657 |
80.63 % |
69366059501 |
77.75 % |
| NotPassed |
186133214 |
18.35 % |
18799454614 |
21.07 % |
| |
|
|
|
|
| LowMAPQ |
163138442 |
16.08 % |
16476982642 |
18.47 % |
| MateUnmapped |
10355519 |
1.02 % |
1045907419 |
1.17 % |
| Duplicate |
9804641 |
0.97 % |
990268741 |
1.11 % |
| BadOrientation |
36 |
0.00 % |
3636 |
0.00 % |
| LargeInsertSize |
12890 |
0.00 % |
1301890 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13177205 |
1.30 % |
1330897705 |
1.49 % |
| Unmapped |
10355519 |
1.02 % |
1045907419 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82604399643 |
100% |
| Passed |
65188439251 |
78.92 % |
| Trimmed |
3492959232 |
4.23 % |
| Clipped |
92724120 |
0.11 % |
| Overlapping |
13145616022 |
15.91 % |
| LowQuality |
684661018 |
0.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |