/EXTERNAL BLUEPRINT/methylation/K006341_12_lane_gembs

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SAMPLE K006341_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26612222 20550571 77.22 %
NonRefCpG 327057 155652 47.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006341_12_lane_gembs_coverage_refCpG.png ./IMG//K006341_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006341_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006341_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006341_12_lane_gembs_quality_refcpg.png ./IMG//K006341_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006341_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6281713 13.11 % 4672049 11.55 % 105054 18.75 % 30897 8.97 %
Intermediate (0.3-0.7) 7554861 15.77 % 5195639 12.84 % 124106 22.15 % 56770 16.48 %
Methylated (0.7-1) 34075827 71.12 % 30581623 75.60 % 331170 59.10 % 256748 74.55 %
Median Methylation 0.850 0.870 0.780 0.860