/EXTERNAL BLUEPRINT/methylation/K010370_1_lane_gembs

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SAMPLE K010370_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 21091707 210165 1.00 %
NonRefCpG 364393 811 0.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010370_1_lane_gembs_coverage_refCpG.png ./IMG//K010370_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010370_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010370_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010370_1_lane_gembs_quality_refcpg.png ./IMG//K010370_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010370_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4516238 16.14 % 20370 4.23 % 130521 27.26 % 226 7.36 %
Intermediate (0.3-0.7) 9363482 33.45 % 86244 17.89 % 169271 35.36 % 624 20.31 %
Methylated (0.7-1) 14110191 50.41 % 375349 77.88 % 178968 37.38 % 2223 72.33 %
Median Methylation 0.700 0.870 0.570 0.850