/EXTERNAL BLUEPRINT/K006353_12_lane_gembs

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SAMPLE K006353_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 971703446 100.00 % 485851723 100.00 % 485851723 100.00 %
General Reads 932253404 95.94 % 467647260 96.25 % 464606144 95.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16419002 1.69 % 8227087 1.69 % 8191915 1.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23031040 2.37 % 9977376 2.05 % 13053664 2.69 %
Bisulfite_reads C2T 494583587 50.90 % 248108118 51.07 % 246475469 50.73 %
Bisulfite_reads G2A 454088819 46.73 % 227766229 46.88 % 226322590 46.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 382792148
Average Unique 78.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35238095376 35.55 % 13826605515 27.90 % 21411489861 43.21 %
Base Counts Overall C 13814716463 13.94 % 766203154 1.55 % 13048513309 26.33 %
Base Counts Overall G 13978884843 14.10 % 13233724757 26.70 % 745160086 1.50 %
Base Counts Overall T 35077353221 35.39 % 21237615042 42.86 % 13839738179 27.93 %
Base Counts Overall N 1004701589 1.01 % 492727278 0.99 % 511974311 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991316984404642
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 459269979



Mapping Quality

Mapping Quality Histogram
K006353_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006353_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00007.Bisulfite-Seq.DNA_Methylation.EGAX00001290292_12