/EXTERNAL BLUEPRINT/methylation/K006353_12_lane_gembs

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SAMPLE K006353_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26399390 18875257 71.50 %
NonRefCpG 321887 136606 42.44 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006353_12_lane_gembs_coverage_refCpG.png ./IMG//K006353_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006353_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006353_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006353_12_lane_gembs_quality_refcpg.png ./IMG//K006353_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006353_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6410690 13.99 % 4135795 11.28 % 106850 20.11 % 29078 9.71 %
Intermediate (0.3-0.7) 7696976 16.80 % 4717181 12.87 % 122944 23.14 % 48633 16.25 %
Methylated (0.7-1) 31716621 69.21 % 27808287 75.85 % 301429 56.74 % 221618 74.04 %
Median Methylation 0.860 0.890 0.770 0.880