/EXTERNAL BLUEPRINT/K006367_20_lane_gembs

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SAMPLE K006367_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1303513956 100.00 % 651756978 100.00 % 651756978 100.00 %
General Reads 1206674837 92.57 % 604319669 92.72 % 602355168 92.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23322838 1.79 % 11703330 1.80 % 11619508 1.78 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 73516281 5.64 % 35733979 5.48 % 37782302 5.80 %
Bisulfite_reads C2T 640297404 49.12 % 320799310 49.22 % 319498094 49.02 %
Bisulfite_reads G2A 589700271 45.24 % 295223689 45.30 % 294476582 45.18 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 464919544
Average Unique 71.33 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47912643215 36.04 % 18862934473 28.37 % 29049708742 43.70 %
Base Counts Overall C 18033449201 13.56 % 1472537182 2.22 % 16560912019 24.91 %
Base Counts Overall G 18722096305 14.08 % 17028470745 25.61 % 1693625560 2.55 %
Base Counts Overall T 46967220768 35.32 % 28458266354 42.81 % 18508954414 27.84 %
Base Counts Overall N 1323014023 1.00 % 657003002 0.99 % 666011021 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9976422285365933
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 561927935



Mapping Quality

Mapping Quality Histogram
K006367_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006367_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
T13_1.Bisulfite-Seq.DNA_Methylation.EGAX00001312498