/EXTERNAL BLUEPRINT/mapping_coverage/K006367_20_lane_gembs
BACK
SAMPLE K006367_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1118767827 |
100% |
97407159930 |
100% |
| Mapped |
1098632939 |
98.20 % |
95373536242 |
97.91 % |
| Passed |
742333278 |
66.35 % |
59387270481 |
60.97 % |
| NotPassed |
356299661 |
31.85 % |
35986265761 |
36.94 % |
| |
|
|
|
|
| LowMAPQ |
244344366 |
21.84 % |
24678780966 |
25.34 % |
| MateUnmapped |
20134888 |
1.80 % |
2033623688 |
2.09 % |
| Duplicate |
89394914 |
7.99 % |
9028886314 |
9.27 % |
| BadOrientation |
82 |
0.00 % |
8282 |
0.00 % |
| LargeInsertSize |
21690 |
0.00 % |
2190690 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22538609 |
2.01 % |
2276399509 |
2.34 % |
| Unmapped |
20134888 |
1.80 % |
2033623688 |
2.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74946166149 |
100% |
| Passed |
55999538899 |
74.72 % |
| Trimmed |
3065070683 |
4.09 % |
| Clipped |
173997837 |
0.23 % |
| Overlapping |
15384897831 |
20.53 % |
| LowQuality |
322660899 |
0.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |