/EXTERNAL BLUEPRINT/methylation/K006367_20_lane_gembs

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SAMPLE K006367_20_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26599813 17540500 65.94 %
NonRefCpG 374469 120832 32.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006367_20_lane_gembs_coverage_refCpG.png ./IMG//K006367_20_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006367_20_lane_gembs_coverage_nonRefCpG.png ./IMG//K006367_20_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006367_20_lane_gembs_quality_refcpg.png ./IMG//K006367_20_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006367_20_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7835715 15.93 % 5406880 14.16 % 191831 28.71 % 52110 15.16 %
Intermediate (0.3-0.7) 13542532 27.53 % 8940190 23.42 % 201113 30.10 % 96692 28.13 %
Methylated (0.7-1) 27806323 56.53 % 23827473 62.42 % 275135 41.18 % 194877 56.70 %
Median Methylation 0.740 0.780 0.600 0.740