{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 36703114, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36266809, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.81, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 35774843, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34544713, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.56, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 29474800, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1733152, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.058801
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 30596494, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 815028, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.026638
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 29473797, 
            "distinct_read_pairs": 27810284, 
            "one_read_pair": 26243138, 
            "two_read_pair": 1482167, 
            "NRF": 0.94356, 
            "PBC1": 0.943649, 
            "PBC2": 17.705925
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 30546266, 
            "distinct_read_pairs": 29766455, 
            "one_read_pair": 29054336, 
            "two_read_pair": 691772, 
            "NRF": 0.974471, 
            "PBC1": 0.976076, 
            "PBC2": 41.999873
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 27741648, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27741648, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 29781466, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 29781466, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 121656, 
        "Np": 0, 
        "N_opt": 121656, 
        "N_consv": 121656, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 180, 
            "corr_est_frag_len": 0.195978191913669, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1981291, 
            "argmin_corr": 1500, 
            "min_corr": 0.1903182, 
            "NSC": 1.029739, 
            "RSC": 0.7246269
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.516710504141
        }, 
        "rep1-pr1": {
            "FRiP": 0.470791716122
        }, 
        "rep1-pr2": {
            "FRiP": 0.47097977688
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.463857415406
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.141041503223, 
            "auc": 0.489680595328, 
            "ch_div": 0.238117135237, 
            "elbow_pt": 1.14752303326e-79, 
            "jsd": 0.810369991243, 
            "syn_auc": 0.51934608268, 
            "syn_elbow_pt": 0.343286785288, 
            "syn_jsd": 0.471511391697
        }
    ]
}
