/EXTERNAL BLUEPRINT/K006369_13_lane_gembs

BACK

SAMPLE K006369_13_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1607196160 100.00 % 803598080 100.00 % 803598080 100.00 %
General Reads 1528067671 95.08 % 766725952 95.41 % 761341719 94.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 36987241 2.30 % 18536606 2.31 % 18450635 2.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 42141248 2.62 % 18335522 2.28 % 23805726 2.96 %
Bisulfite_reads C2T 821515427 51.11 % 412221213 51.30 % 409294214 50.93 %
Bisulfite_reads G2A 743539485 46.26 % 373041345 46.42 % 370498140 46.10 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 637588583
Average Unique 79.34 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 59584150968 36.35 % 23290967908 28.42 % 36293183060 44.28 %
Base Counts Overall C 21555105399 13.15 % 1157534939 1.41 % 20397570460 24.89 %
Base Counts Overall G 21980836368 13.41 % 20866232012 25.46 % 1114604356 1.36 %
Base Counts Overall T 59174068402 36.10 % 35835629851 43.72 % 23338438551 28.47 %
Base Counts Overall N 1639847183 1.00 % 816639450 1.00 % 823207733 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992990051357483
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 757997585



Mapping Quality

Mapping Quality Histogram
K006369_13_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006369_13_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
PB130513.Bisulfite-Seq.DNA_Methylation.EGAX00001340343_13