/EXTERNAL BLUEPRINT/mapping_coverage/K006369_13_lane_gembs
BACK
SAMPLE K006369_13_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1496263170 |
100% |
131009579985 |
100% |
| Mapped |
1481532049 |
99.02 % |
129521736764 |
98.86 % |
| Passed |
1187505065 |
79.36 % |
99825011380 |
76.20 % |
| NotPassed |
294026984 |
19.65 % |
29696725384 |
22.67 % |
| |
|
|
|
|
| LowMAPQ |
241919918 |
16.17 % |
24433911718 |
18.65 % |
| MateUnmapped |
14731121 |
0.98 % |
1487843221 |
1.14 % |
| Duplicate |
31866754 |
2.13 % |
3218542154 |
2.46 % |
| BadOrientation |
66 |
0.00 % |
6666 |
0.00 % |
| LargeInsertSize |
16422 |
0.00 % |
1658622 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20223824 |
1.35 % |
2042606224 |
1.56 % |
| Unmapped |
14731121 |
0.98 % |
1487843221 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
119932095490 |
100% |
| Passed |
93673215142 |
78.11 % |
| Trimmed |
5030808765 |
4.19 % |
| Clipped |
131571176 |
0.11 % |
| Overlapping |
19975512934 |
16.66 % |
| LowQuality |
1120987473 |
0.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |