/EXTERNAL BLUEPRINT/K006365_20_lane_gembs/T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001312496

BACK

SAMPLE K006365_20_lane_gembs LANE T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001312496

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1287827580 100.00 % 643913790 100.00 % 643913790 100.00 %
General Reads 1241952103 96.44 % 623656708 96.85 % 618295395 96.02 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16373872 1.27 % 8215188 1.28 % 8158684 1.27 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29501605 2.29 % 12041894 1.87 % 17459711 2.71 %
Bisulfite_reads C2T 650317446 50.50 % 326549082 50.71 % 323768364 50.28 %
Bisulfite_reads G2A 608008529 47.21 % 305322814 47.42 % 302685715 47.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 519701688
Average Unique 80.71 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48658125799 37.04 % 18683645905 28.45 % 29974479894 45.64 %
Base Counts Overall C 16315463820 12.42 % 809468264 1.23 % 15505995556 23.61 %
Base Counts Overall G 16600767620 12.64 % 15810876349 24.07 % 789891271 1.20 %
Base Counts Overall T 48475882385 36.90 % 29726149131 45.26 % 18749733254 28.55 %
Base Counts Overall N 1308173536 1.00 % 649066931 0.99 % 659106605 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989929810486605
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 611766308



Mapping Quality

Mapping Quality Histogram
T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001312496.mapq.png



Read Length

Read Length Reads
101 643913790
101 643913790



Insert Size Plot

Insert Size Histogram
T14_10.Bisulfite-Seq.DNA_Methylation.EGAX00001312496.isize.png