/EXTERNAL BLUEPRINT/mapping_coverage/K006365_20_lane_gembs
BACK
SAMPLE K006365_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1216375819 |
100% |
109562970754 |
100% |
| Mapped |
1202605354 |
98.87 % |
108172153789 |
98.73 % |
| Passed |
981274098 |
80.67 % |
85817696933 |
78.33 % |
| NotPassed |
221331256 |
18.20 % |
22354456856 |
20.40 % |
| |
|
|
|
|
| LowMAPQ |
179002244 |
14.72 % |
18079226644 |
16.50 % |
| MateUnmapped |
13770465 |
1.13 % |
1390816965 |
1.27 % |
| Duplicate |
25590366 |
2.10 % |
2584626966 |
2.36 % |
| BadOrientation |
6 |
0.00 % |
606 |
0.00 % |
| LargeInsertSize |
9028 |
0.00 % |
911828 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16729612 |
1.38 % |
1689690812 |
1.54 % |
| Unmapped |
13770465 |
1.13 % |
1390816965 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99102168085 |
100% |
| Passed |
80991576940 |
81.73 % |
| Trimmed |
4240632772 |
4.28 % |
| Clipped |
120591191 |
0.12 % |
| Overlapping |
13163879961 |
13.28 % |
| LowQuality |
585487221 |
0.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |