/EXTERNAL BLUEPRINT/methylation/K006365_20_lane_gembs

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SAMPLE K006365_20_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26803741 22411668 83.61 %
NonRefCpG 313096 171420 54.75 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006365_20_lane_gembs_coverage_refCpG.png ./IMG//K006365_20_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006365_20_lane_gembs_coverage_nonRefCpG.png ./IMG//K006365_20_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006365_20_lane_gembs_quality_refcpg.png ./IMG//K006365_20_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006365_20_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7124153 13.77 % 5935631 12.79 % 117475 20.15 % 44056 10.81 %
Intermediate (0.3-0.7) 10997646 21.25 % 8876597 19.13 % 149285 25.61 % 94836 23.28 %
Methylated (0.7-1) 33625402 64.98 % 31596027 68.08 % 316109 54.23 % 268503 65.91 %
Median Methylation 0.800 0.820 0.730 0.800