/EXTERNAL BLUEPRINT/mapping_coverage/K010521_1_lane_gembs
BACK
SAMPLE K010521_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1247628116 |
100% |
108830238229 |
100% |
| Mapped |
1234843113 |
98.98 % |
107538952926 |
98.81 % |
| Passed |
968389418 |
77.62 % |
80627129731 |
74.09 % |
| NotPassed |
266453695 |
21.36 % |
26911823195 |
24.73 % |
| |
|
|
|
|
| LowMAPQ |
227115742 |
18.20 % |
22938689942 |
21.08 % |
| MateUnmapped |
12785003 |
1.02 % |
1291285303 |
1.19 % |
| Duplicate |
18457542 |
1.48 % |
1864211742 |
1.71 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
30970 |
0.00 % |
3127970 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20849373 |
1.67 % |
2105786673 |
1.93 % |
| Unmapped |
12785003 |
1.02 % |
1291285303 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97801841767 |
100% |
| Passed |
75813500950 |
77.52 % |
| Trimmed |
4075503509 |
4.17 % |
| Clipped |
146614111 |
0.15 % |
| Overlapping |
17028097925 |
17.41 % |
| LowQuality |
738125272 |
0.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |