/EXTERNAL BLUEPRINT/methylation/K010521_1_lane_gembs

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SAMPLE K010521_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26537926 18568525 69.97 %
NonRefCpG 327248 131726 40.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010521_1_lane_gembs_coverage_refCpG.png ./IMG//K010521_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010521_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010521_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010521_1_lane_gembs_quality_refcpg.png ./IMG//K010521_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010521_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6763184 14.56 % 4662850 12.61 % 116437 21.34 % 32646 10.77 %
Intermediate (0.3-0.7) 10292855 22.16 % 6480776 17.52 % 150519 27.58 % 66048 21.78 %
Methylated (0.7-1) 29381804 63.27 % 25841126 69.87 % 278729 51.08 % 204496 67.45 %
Median Methylation 0.800 0.840 0.710 0.820