/EXTERNAL BLUEPRINT/K006345_12_lane_gembs

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SAMPLE K006345_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1183036754 100.00 % 591518377 100.00 % 591518377 100.00 %
General Reads 1132444673 95.72 % 568146255 96.05 % 564298418 95.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22154455 1.87 % 11103022 1.88 % 11051433 1.87 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28437626 2.40 % 12269100 2.07 % 16168526 2.73 %
Bisulfite_reads C2T 606908615 51.30 % 304485695 51.48 % 302422920 51.13 %
Bisulfite_reads G2A 547690513 46.30 % 274763582 46.45 % 272926931 46.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 467588084
Average Unique 79.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43595399779 36.13 % 16955476558 28.10 % 26639923221 44.15 %
Base Counts Overall C 16093025609 13.34 % 855727242 1.42 % 15237298367 25.25 %
Base Counts Overall G 16370209975 13.57 % 15540426656 25.76 % 829783319 1.38 %
Base Counts Overall T 43418945538 35.98 % 26386263259 43.73 % 17032682279 28.23 %
Base Counts Overall N 1192168007 0.99 % 596980739 0.99 % 595187268 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992994495413826
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 559330941



Mapping Quality

Mapping Quality Histogram
K006345_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006345_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
PB100713.Bisulfite-Seq.DNA_Methylation.EGAX00001290192_12