/EXTERNAL BLUEPRINT/mapping_coverage/K006345_12_lane_gembs
BACK
SAMPLE K006345_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1117549797 |
100% |
97989195439 |
100% |
| Mapped |
1106550251 |
99.02 % |
96878241293 |
98.87 % |
| Passed |
893166621 |
79.92 % |
75326494663 |
76.87 % |
| NotPassed |
213383630 |
19.09 % |
21551746630 |
21.99 % |
| |
|
|
|
|
| LowMAPQ |
183318312 |
16.40 % |
18515149512 |
18.90 % |
| MateUnmapped |
10999546 |
0.98 % |
1110954146 |
1.13 % |
| Duplicate |
14920809 |
1.34 % |
1507001709 |
1.54 % |
| BadOrientation |
40 |
0.00 % |
4040 |
0.00 % |
| LargeInsertSize |
12920 |
0.00 % |
1304920 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15131549 |
1.35 % |
1528286449 |
1.56 % |
| Unmapped |
10999546 |
0.98 % |
1110954146 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
90205001527 |
100% |
| Passed |
70760443273 |
78.44 % |
| Trimmed |
3797094585 |
4.21 % |
| Clipped |
103613504 |
0.11 % |
| Overlapping |
14774893360 |
16.38 % |
| LowQuality |
768956805 |
0.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |