/EXTERNAL BLUEPRINT/methylation/K006345_12_lane_gembs

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SAMPLE K006345_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26760367 21238210 79.36 %
NonRefCpG 330483 163347 49.43 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006345_12_lane_gembs_coverage_refCpG.png ./IMG//K006345_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006345_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006345_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006345_12_lane_gembs_quality_refcpg.png ./IMG//K006345_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006345_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6311695 12.99 % 4777888 11.45 % 109455 19.11 % 32492 8.98 %
Intermediate (0.3-0.7) 7040823 14.49 % 4973486 11.92 % 121001 21.12 % 57248 15.81 %
Methylated (0.7-1) 35227811 72.51 % 31963882 76.62 % 342363 59.77 % 272285 75.21 %
Median Methylation 0.860 0.880 0.790 0.870