/EXTERNAL BLUEPRINT/K006336_5_lane_gembs/NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273468

BACK

SAMPLE K006336_5_lane_gembs LANE NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273468

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1888880090 100.00 % 944440045 100.00 % 944440045 100.00 %
General Reads 1801478801 95.37 % 903710165 95.69 % 897768636 95.06 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 39204803 2.08 % 19649624 2.08 % 19555179 2.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 48196486 2.55 % 21080256 2.23 % 27116230 2.87 %
Bisulfite_reads C2T 959860195 50.82 % 481506053 50.98 % 478354142 50.65 %
Bisulfite_reads G2A 880823409 46.63 % 441853736 46.78 % 438969673 46.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 750361993
Average Unique 79.45 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70067257898 36.37 % 27049550247 28.08 % 43017707651 44.66 %
Base Counts Overall C 25412754114 13.19 % 1447260070 1.50 % 23965494044 24.88 %
Base Counts Overall G 25781691345 13.38 % 24397288939 25.33 % 1384402406 1.44 %
Base Counts Overall T 69474510949 36.06 % 42474070402 44.09 % 27000440547 28.03 %
Base Counts Overall N 1929554874 1.00 % 964714932 1.00 % 964839942 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99906271810748
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 889799365



Mapping Quality

Mapping Quality Histogram
NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273468.mapq.png



Read Length

Read Length Reads
101 944440045
101 944440045



Insert Size Plot

Insert Size Histogram
NC11_41.Bisulfite-Seq.DNA_Methylation.EGAX00001273468.isize.png