/EXTERNAL BLUEPRINT/mapping_coverage/K006336_5_lane_gembs
BACK
SAMPLE K006336_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1774991364 |
100% |
154166721539 |
100% |
| Mapped |
1757721547 |
99.03 % |
152422470022 |
98.87 % |
| Passed |
1424597963 |
80.26 % |
118776988038 |
77.04 % |
| NotPassed |
333123584 |
18.77 % |
33645481984 |
21.82 % |
| |
|
|
|
|
| LowMAPQ |
283013534 |
15.94 % |
28584366934 |
18.54 % |
| MateUnmapped |
17269817 |
0.97 % |
1744251517 |
1.13 % |
| Duplicate |
26553688 |
1.50 % |
2681922488 |
1.74 % |
| BadOrientation |
60 |
0.00 % |
6060 |
0.00 % |
| LargeInsertSize |
20362 |
0.00 % |
2056562 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23535940 |
1.33 % |
2377129940 |
1.54 % |
| Unmapped |
17269817 |
0.97 % |
1744251517 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143878304266 |
100% |
| Passed |
111579812395 |
77.55 % |
| Trimmed |
6029070653 |
4.19 % |
| Clipped |
165464727 |
0.12 % |
| Overlapping |
24935851501 |
17.33 % |
| LowQuality |
1168104990 |
0.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |